Pseudoalteromonas ruthenica sp. nov., isolated from marine invertebrates
Identifieur interne : 00B587 ( Main/Exploration ); précédent : 00B586; suivant : 00B588Pseudoalteromonas ruthenica sp. nov., isolated from marine invertebrates
Auteurs : Elena P. Ivanova [Russie] ; Tomoo Sawabe [Japon] ; Anatolii M. Lysenko [Russie] ; Nataliya M. Gorshkova [Russie] ; Vassilii I. Svetashev [Russie] ; Dan V. Nicolau [Australie] ; Noboru Yumoto [Japon] ; Takahisa Taguchi [Japon] ; Susumu Yoshikawa [Japon] ; Richard Christen [France] ; Valery V. Mikhailov [Russie]Source :
- International journal of systematic and evolutionary microbiology : (Print) [ 1466-5026 ] ; 2002.
Descripteurs français
- Pascal (Inist)
- Wicri :
- topic : Milieu marin.
English descriptors
- KwdEn :
Abstract
On the basis of phenotypic and genotypic characteristics and analysis of 16S rRNA sequences, a novel species belonging to the genus Pseudoalteromonas is described. Two pale-orange-pigmented strains, KMM 300T and KMM 290, isolated respectively from a mussel, Crenomytilus grayanus, and a scallop, Patinopecten yessoensis, are marine, Gram-negative, aerobic, rod-shaped bacteria that produce a number of antimicrobial compounds. The strains are able to degrade gelatin, elastin, starch, DNA and Tween 80. Chitin and agar are not degraded. The isolates from marine invertebrates grew at NaCI concentrations of 1-9% and a temperature range of 10-35 °C and did not utilize most of the wide range of carbohydrates tested, with the exception of D-glucose, cellobiose and sucrose. The DNA G+C content was 48.4-48.9 mol%. The level of DNA homology of the two strains was 98%. DNA from the strains isolated from marine invertebrates showed 5-15% genetic relatedness to the DNA of other type strains of the genus Pseudoalteromonas. 165 rRNA analysis indicated a clear affiliation of the novel bacteria to other species of the genus. The strains are assigned to a novel species, Pseudomonas ruthenica sp. nov., with the type strain KMM 300T (= LMG 19699T = CIP 106857T).
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Ivanova</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159</s1><s2>690022 Vladivostok</s2><s3>RUS</s3><sZ>1 aut.</sZ><sZ>4 aut.</sZ><sZ>11 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>690022 Vladivostok</wicri:noRegion></affiliation></author><author><name sortKey="Sawabe, Tomoo" sort="Sawabe, Tomoo" uniqKey="Sawabe T" first="Tomoo" last="Sawabe">Tomoo Sawabe</name><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Laboratory of Microbiology, Graduate School of Fisheries Sciences, Faculty of Fisheries, Hokkaido, University</s1><s2>3-1-1 Minatocho, Hakodate 041-8611</s2><s3>JPN</s3><sZ>2 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>3-1-1 Minatocho, Hakodate 041-8611</wicri:noRegion></affiliation></author><author><name sortKey="Lysenko, Anatolii M" sort="Lysenko, Anatolii M" uniqKey="Lysenko A" first="Anatolii M." last="Lysenko">Anatolii M. 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Svetashev</name><affiliation wicri:level="1"><inist:fA14 i1="04"><s1>Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences</s1><s2>690041 Vladivostok</s2><s3>RUS</s3><sZ>5 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences</wicri:noRegion></affiliation></author><author><name sortKey="Nicolau, Dan V" sort="Nicolau, Dan V" uniqKey="Nicolau D" first="Dan V." last="Nicolau">Dan V. Nicolau</name><affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Industrial Research Institute Swinburne, Swinburne University of Technology, PO Box 218</s1><s2>Hawthorn, Vic 3122</s2><s3>AUS</s3><sZ>6 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Hawthorn, Vic 3122</wicri:noRegion></affiliation></author><author><name sortKey="Yumoto, Noboru" sort="Yumoto, Noboru" uniqKey="Yumoto N" first="Noboru" last="Yumoto">Noboru Yumoto</name><affiliation wicri:level="1"><inist:fA14 i1="06"><s1>National Institute of Advanced Industrial Science and Technology, AIST</s1><s2>Ikeda, Osaka 563</s2><s3>JPN</s3><sZ>7 aut.</sZ><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>Ikeda, Osaka 563</wicri:noRegion></affiliation></author><author><name sortKey="Taguchi, Takahisa" sort="Taguchi, Takahisa" uniqKey="Taguchi T" first="Takahisa" last="Taguchi">Takahisa Taguchi</name><affiliation wicri:level="1"><inist:fA14 i1="06"><s1>National Institute of Advanced Industrial Science and Technology, AIST</s1><s2>Ikeda, Osaka 563</s2><s3>JPN</s3><sZ>7 aut.</sZ><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>Ikeda, Osaka 563</wicri:noRegion></affiliation></author><author><name sortKey="Yoshikawa, Susumu" sort="Yoshikawa, Susumu" uniqKey="Yoshikawa S" first="Susumu" last="Yoshikawa">Susumu Yoshikawa</name><affiliation wicri:level="1"><inist:fA14 i1="06"><s1>National Institute of Advanced Industrial Science and Technology, AIST</s1><s2>Ikeda, Osaka 563</s2><s3>JPN</s3><sZ>7 aut.</sZ><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>Ikeda, Osaka 563</wicri:noRegion></affiliation></author><author><name sortKey="Christen, Richard" sort="Christen, Richard" uniqKey="Christen R" first="Richard" last="Christen">Richard Christen</name><affiliation wicri:level="1"><inist:fA14 i1="07"><s1>Centre National de la Recherche Scientifique et University, Pierre et Marie Curie Station Zoologique</s1><s2>Villefranche-sur-Mer 06230</s2><s3>FRA</s3><sZ>10 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>06230</wicri:noRegion><wicri:noRegion>Pierre et Marie Curie Station Zoologique</wicri:noRegion><wicri:noRegion>Villefranche-sur-Mer 06230</wicri:noRegion></affiliation></author><author><name sortKey="Mikhailov, Valery V" sort="Mikhailov, Valery V" uniqKey="Mikhailov V" first="Valery V." last="Mikhailov">Valery V. Mikhailov</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159</s1><s2>690022 Vladivostok</s2><s3>RUS</s3><sZ>1 aut.</sZ><sZ>4 aut.</sZ><sZ>11 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>690022 Vladivostok</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">INIST</idno><idno type="inist">02-0168579</idno><date when="2002">2002</date><idno type="stanalyst">PASCAL 02-0168579 LGMI</idno><idno type="RBID">Pascal:02-0168579</idno><idno type="wicri:Area/PascalFrancis/Corpus">005868</idno><idno type="wicri:Area/PascalFrancis/Curation">000871</idno><idno type="wicri:Area/PascalFrancis/Checkpoint">005270</idno><idno type="wicri:explorRef" wicri:stream="PascalFrancis" wicri:step="Checkpoint">005270</idno><idno type="wicri:doubleKey">1466-5026:2002:Ivanova E:pseudoalteromonas:ruthenica:sp</idno><idno type="wicri:Area/Main/Merge">00C391</idno><idno type="wicri:Area/Main/Curation">00B587</idno><idno type="wicri:Area/Main/Exploration">00B587</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Pseudoalteromonas ruthenica sp. nov., isolated from marine invertebrates</title><author><name sortKey="Ivanova, Elena P" sort="Ivanova, Elena P" uniqKey="Ivanova E" first="Elena P." last="Ivanova">Elena P. Ivanova</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159</s1><s2>690022 Vladivostok</s2><s3>RUS</s3><sZ>1 aut.</sZ><sZ>4 aut.</sZ><sZ>11 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>690022 Vladivostok</wicri:noRegion></affiliation></author><author><name sortKey="Sawabe, Tomoo" sort="Sawabe, Tomoo" uniqKey="Sawabe T" first="Tomoo" last="Sawabe">Tomoo Sawabe</name><affiliation wicri:level="1"><inist:fA14 i1="02"><s1>Laboratory of Microbiology, Graduate School of Fisheries Sciences, Faculty of Fisheries, Hokkaido, University</s1><s2>3-1-1 Minatocho, Hakodate 041-8611</s2><s3>JPN</s3><sZ>2 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>3-1-1 Minatocho, Hakodate 041-8611</wicri:noRegion></affiliation></author><author><name sortKey="Lysenko, Anatolii M" sort="Lysenko, Anatolii M" uniqKey="Lysenko A" first="Anatolii M." last="Lysenko">Anatolii M. Lysenko</name><affiliation wicri:level="1"><inist:fA14 i1="03"><s1>Institute of Microbiology of the Russian Academy of Sciences</s1><s2>117811 Moscow</s2><s3>RUS</s3><sZ>3 aut.</sZ></inist:fA14><country>Russie</country><placeName><settlement type="city">Moscou</settlement><region>District fédéral central</region></placeName></affiliation></author><author><name sortKey="Gorshkova, Nataliya M" sort="Gorshkova, Nataliya M" uniqKey="Gorshkova N" first="Nataliya M." last="Gorshkova">Nataliya M. Gorshkova</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159</s1><s2>690022 Vladivostok</s2><s3>RUS</s3><sZ>1 aut.</sZ><sZ>4 aut.</sZ><sZ>11 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>690022 Vladivostok</wicri:noRegion></affiliation></author><author><name sortKey="Svetashev, Vassilii I" sort="Svetashev, Vassilii I" uniqKey="Svetashev V" first="Vassilii I." last="Svetashev">Vassilii I. Svetashev</name><affiliation wicri:level="1"><inist:fA14 i1="04"><s1>Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences</s1><s2>690041 Vladivostok</s2><s3>RUS</s3><sZ>5 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>Institute of Marine Biology of the Far-Eastern Branch of the Russian Academy of Sciences</wicri:noRegion></affiliation></author><author><name sortKey="Nicolau, Dan V" sort="Nicolau, Dan V" uniqKey="Nicolau D" first="Dan V." last="Nicolau">Dan V. Nicolau</name><affiliation wicri:level="1"><inist:fA14 i1="05"><s1>Industrial Research Institute Swinburne, Swinburne University of Technology, PO Box 218</s1><s2>Hawthorn, Vic 3122</s2><s3>AUS</s3><sZ>6 aut.</sZ></inist:fA14><country>Australie</country><wicri:noRegion>Hawthorn, Vic 3122</wicri:noRegion></affiliation></author><author><name sortKey="Yumoto, Noboru" sort="Yumoto, Noboru" uniqKey="Yumoto N" first="Noboru" last="Yumoto">Noboru Yumoto</name><affiliation wicri:level="1"><inist:fA14 i1="06"><s1>National Institute of Advanced Industrial Science and Technology, AIST</s1><s2>Ikeda, Osaka 563</s2><s3>JPN</s3><sZ>7 aut.</sZ><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>Ikeda, Osaka 563</wicri:noRegion></affiliation></author><author><name sortKey="Taguchi, Takahisa" sort="Taguchi, Takahisa" uniqKey="Taguchi T" first="Takahisa" last="Taguchi">Takahisa Taguchi</name><affiliation wicri:level="1"><inist:fA14 i1="06"><s1>National Institute of Advanced Industrial Science and Technology, AIST</s1><s2>Ikeda, Osaka 563</s2><s3>JPN</s3><sZ>7 aut.</sZ><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>Ikeda, Osaka 563</wicri:noRegion></affiliation></author><author><name sortKey="Yoshikawa, Susumu" sort="Yoshikawa, Susumu" uniqKey="Yoshikawa S" first="Susumu" last="Yoshikawa">Susumu Yoshikawa</name><affiliation wicri:level="1"><inist:fA14 i1="06"><s1>National Institute of Advanced Industrial Science and Technology, AIST</s1><s2>Ikeda, Osaka 563</s2><s3>JPN</s3><sZ>7 aut.</sZ><sZ>8 aut.</sZ><sZ>9 aut.</sZ></inist:fA14><country>Japon</country><wicri:noRegion>Ikeda, Osaka 563</wicri:noRegion></affiliation></author><author><name sortKey="Christen, Richard" sort="Christen, Richard" uniqKey="Christen R" first="Richard" last="Christen">Richard Christen</name><affiliation wicri:level="1"><inist:fA14 i1="07"><s1>Centre National de la Recherche Scientifique et University, Pierre et Marie Curie Station Zoologique</s1><s2>Villefranche-sur-Mer 06230</s2><s3>FRA</s3><sZ>10 aut.</sZ></inist:fA14><country>France</country><wicri:noRegion>06230</wicri:noRegion><wicri:noRegion>Pierre et Marie Curie Station Zoologique</wicri:noRegion><wicri:noRegion>Villefranche-sur-Mer 06230</wicri:noRegion></affiliation></author><author><name sortKey="Mikhailov, Valery V" sort="Mikhailov, Valery V" uniqKey="Mikhailov V" first="Valery V." last="Mikhailov">Valery V. Mikhailov</name><affiliation wicri:level="1"><inist:fA14 i1="01"><s1>Pacific Institute of Bioorganic Chemistry of the Far-Eastern Branch of the Russian Academy of Sciences, Pr. 100 Let Vladivostoku 159</s1><s2>690022 Vladivostok</s2><s3>RUS</s3><sZ>1 aut.</sZ><sZ>4 aut.</sZ><sZ>11 aut.</sZ></inist:fA14><country>Russie</country><wicri:noRegion>690022 Vladivostok</wicri:noRegion></affiliation></author></analytic><series><title level="j" type="main">International journal of systematic and evolutionary microbiology : (Print)</title><title level="j" type="abbreviated">Int. j. syst. evol. microbiol. : (Print)</title><idno type="ISSN">1466-5026</idno><imprint><date when="2002">2002</date></imprint></series></biblStruct></sourceDesc><seriesStmt><title level="j" type="main">International journal of systematic and evolutionary microbiology : (Print)</title><title level="j" type="abbreviated">Int. j. syst. evol. microbiol. : (Print)</title><idno type="ISSN">1466-5026</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>16S-RNA</term><term>Crenomytilus grayanus</term><term>Genotype</term><term>Isolate</term><term>Marine environment</term><term>Patinopecten yessoensis</term><term>Phenotype</term><term>Phylogeny</term><term>Ribosomal DNA</term></keywords><keywords scheme="Pascal" xml:lang="fr"><term>Isolat</term><term>Crenomytilus grayanus</term><term>Patinopecten yessoensis</term><term>Milieu marin</term><term>Phénotype</term><term>Génotype</term><term>RNA 16S</term><term>DNA ribosomique</term><term>Phylogenèse</term><term>Pseudoalteromonas ruthenica</term></keywords><keywords scheme="Wicri" type="topic" xml:lang="fr"><term>Milieu marin</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">On the basis of phenotypic and genotypic characteristics and analysis of 16S rRNA sequences, a novel species belonging to the genus Pseudoalteromonas is described. Two pale-orange-pigmented strains, KMM 300<sup>T</sup> and KMM 290, isolated respectively from a mussel, Crenomytilus grayanus, and a scallop, Patinopecten yessoensis, are marine, Gram-negative, aerobic, rod-shaped bacteria that produce a number of antimicrobial compounds. The strains are able to degrade gelatin, elastin, starch, DNA and Tween 80. Chitin and agar are not degraded. The isolates from marine invertebrates grew at NaCI concentrations of 1-9% and a temperature range of 10-35 °C and did not utilize most of the wide range of carbohydrates tested, with the exception of D-glucose, cellobiose and sucrose. The DNA G+C content was 48.4-48.9 mol%. The level of DNA homology of the two strains was 98%. DNA from the strains isolated from marine invertebrates showed 5-15% genetic relatedness to the DNA of other type strains of the genus Pseudoalteromonas. 165 rRNA analysis indicated a clear affiliation of the novel bacteria to other species of the genus. The strains are assigned to a novel species, Pseudomonas ruthenica sp. nov., with the type strain KMM 300T (= LMG 19699<sup>T</sup> = CIP 106857T).</div></front></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>Japon</li><li>Russie</li></country><region><li>District fédéral central</li></region><settlement><li>Moscou</li></settlement></list><tree><country name="Russie"><noRegion><name sortKey="Ivanova, Elena P" sort="Ivanova, Elena P" uniqKey="Ivanova E" first="Elena P." last="Ivanova">Elena P. Ivanova</name></noRegion><name sortKey="Gorshkova, Nataliya M" sort="Gorshkova, Nataliya M" uniqKey="Gorshkova N" first="Nataliya M." last="Gorshkova">Nataliya M. Gorshkova</name><name sortKey="Lysenko, Anatolii M" sort="Lysenko, Anatolii M" uniqKey="Lysenko A" first="Anatolii M." last="Lysenko">Anatolii M. Lysenko</name><name sortKey="Mikhailov, Valery V" sort="Mikhailov, Valery V" uniqKey="Mikhailov V" first="Valery V." last="Mikhailov">Valery V. Mikhailov</name><name sortKey="Svetashev, Vassilii I" sort="Svetashev, Vassilii I" uniqKey="Svetashev V" first="Vassilii I." last="Svetashev">Vassilii I. Svetashev</name></country><country name="Japon"><noRegion><name sortKey="Sawabe, Tomoo" sort="Sawabe, Tomoo" uniqKey="Sawabe T" first="Tomoo" last="Sawabe">Tomoo Sawabe</name></noRegion><name sortKey="Taguchi, Takahisa" sort="Taguchi, Takahisa" uniqKey="Taguchi T" first="Takahisa" last="Taguchi">Takahisa Taguchi</name><name sortKey="Yoshikawa, Susumu" sort="Yoshikawa, Susumu" uniqKey="Yoshikawa S" first="Susumu" last="Yoshikawa">Susumu Yoshikawa</name><name sortKey="Yumoto, Noboru" sort="Yumoto, Noboru" uniqKey="Yumoto N" first="Noboru" last="Yumoto">Noboru Yumoto</name></country><country name="Australie"><noRegion><name sortKey="Nicolau, Dan V" sort="Nicolau, Dan V" uniqKey="Nicolau D" first="Dan V." last="Nicolau">Dan V. Nicolau</name></noRegion></country><country name="France"><noRegion><name sortKey="Christen, Richard" sort="Christen, Richard" uniqKey="Christen R" first="Richard" last="Christen">Richard Christen</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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